Molecular evolutionary analyses of nuclear-encoded small subunit ribosomal RNA identify an independent rhizopod lineage containing the Euglyphina and the Chlorarachniophyta.
Molecular evolutionary analyses were also performed.
Phylogenetic and molecular evolutionary analyses were conducted using MEGA version 5.0 software.
Phylogenetic and molecular evolutionary analyses were conducted using MEGA6.0 software (Tamura et al. 2013) with neighbor-joining method (Saitou and Nei 1987) and 1,000 bootstrap replicates.
Phylogenetic and molecular evolutionary analyses were conducted using MEGA [28] version 4.0.2.
Phylogenetic and molecular evolutionary analyses were conducted using MEGA version 4.0 software [47].
Phylogenetic and molecular evolutionary analyses based on 16S rRNA gene sequences comparisons were conducted using MEGA version 3.1 [91].
All the above molecular evolutionary analyses were also carried out for the other chloroplast genes, atpB and petA.
Our molecular evolutionary analyses indicated that Potamogeton rbcL has evolved under positive selection (Tables 1 and 2).
Molecular evolutionary analyses indicate that these sequences are evolving under stabilizing selection, consistent with the maintenance of their functions in the SOPE symbiosis.
The ML trees were used in molecular evolutionary analyses to test for change in constraint on lineages leading to Cuscuta nitida and Epifagus.
