Sentence examples for molecular evolution programs from inspiring English sources

Ga-branch analysis as most molecular evolution programs is computationally challenging and imposed that the number of sample sequences be reduced to 25.

However, despite its advantages, fragment-based molecular structure evolution programs do not follow a structural continuum [46].

The study is supported by the Russian Foundation for Basic Research (project №09-04-01363), the Ministry of Educontractsd Science of Russian Federation (contracts P913 and P315 and project "Phylogenetic analysis of complex selection in molecular evolution"), the President's program for support of young scientists and the Russian Academy of Science Presidium Program "Molecular and Cell Biology".

Analysis of GC and GC3 content as well as codon usage was performed using the DAMBE (Data Analysis in Molecular Biology and Evolution) program [ 23].

The appropriate models of molecular evolution were estimated using the program modelgenerator [ 68].

This program mimics molecular evolution by producing a set of sequences along an evolutionary tree, starting with a common ancestral sequence at the root.

We also conducted a phylogenetic analysis using the program MrBayes 3 [55], implementing a GTR+I+G model of molecular evolution as first selected by the program MrModeltest2 [56].

Molecular evolution of OryzaTPS1s was analyzed using the codeml program in the PAML 4.4 package [ 29].

The generated Bayesian trees served as the basis for the implementation of the maximum likelihood methods of the PAML package of programs [ 41] aiming at detecting adaptive molecular evolution under specific models of codon substitution.

The R8S program [ 54] estimates absolute rates of molecular evolution and divergence times.

Many statistical methods have been developed for detecting adaptive molecular evolution [ 27- 29], such as the "conservative" PAML program [ 30, 31].