Sentence examples for molecular evolution estimation from inspiring English sources
The tree topologies of these individual gene loci or clades were then used as input files for PAML package (v4.4) [ 47] in molecular evolution estimation.
The combination of G+I can overestimate the rate of molecular evolution and, consequently, affect the estimation of divergence times.
The different totals between the diploids and polyploids suggested that more than 2500 genes in the polyploid did not have sufficient polymorphism for an appropriate estimation of molecular evolution.
Because this unusual geology provides a well-defined timeline, honeycreepers are a good system for estimation of rates of molecular evolution [ 14].
These genes were not excluded in estimates of molecular evolution.
Our results highlight the importance of estimating rates of molecular evolution for each specific dataset, selecting for optimal clock and partitioning models as well as other methodological issues potentially affecting rate estimation.
The PartitionFinder estimated best-fit partitioning schemes and models of molecular evolution of Mycalesina data matrix used in the RaxML tree estimation analysis.
Error in divergence date estimation due to error in branch length estimation can result in flawed conclusions about molecular evolution and historical environmental events leading to speciation.
Thus, for the latter, the selection of a suboptimal clock model produces marked differences in the estimation of both the rates of molecular evolution and the inferred TMRCA of Carabus, while this choice reveals no remarkable effects in the case of the mitochondrial genes.
ProtTest [ 78] was used to select a model of molecular evolution and MrBayes [ 79] was used to create a Bayesian estimation of the phylogeny.
In our data set where the spectral properties of some of the visual pigments encoded by duplicate copies are known, this simple procedure brought together a collection of genes in the slow category whose ancestral function has been retained and whose patterns of molecular evolution may have been conducive to phylogenetic reconstruction and divergence times estimation.
