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Molecular evolution analysis showed that the putative amino acid sequence and Arabidopsis thaliana GAUT4 gathered to a same group.
Network software [15] was initially used for phylogenetic and molecular evolution analysis.
This project allowed us to develop reliable picture for Tetrahymena Mt genome organization and conduct molecular evolution analysis.
In addition, analyses of 395 E. coli strains showed decay in the chromosomally-encoded ccdAB TAS and a molecular evolution analysis of these data suggests that this TAS does not seem to retain any role in E. coli [54].
We did not enforce that the substitution rate matrices be normalized to one expected substitution per unit of time (as is common in some molecular evolution analysis), since we wanted to account for the fact that stem regions evolve more slowly than loop or intergenic regions.
CV carried out parts of the molecular evolution analysis.
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The current intra-molecular evolution analysis may have shortcomings on predicting the complicated coevolutionary networks among the entire functional core complex.
The phylogenetic tree was constructed with the Molecular Evolution Genetic Analysis (MEGA) 5.0 software according to the fit model using the maximum-likelihood (ML) method and the bootstrap test was carried out with 1000 iterations.
Phylogenetic analysis through molecular evolution and genetic analysis (MEGA) software and multi dimensional scaling revealed a high degree of conservation of goat TLRs with those from other species.
Computational analyses including genetic polymorphism study, mutation pattern determination, molecular evolution and geophylogenetic analysis were performed to establish the high degree of conservation among the sequences.
Models for molecular evolution for BEAST analysis were selected using the Akaike Information Criteria (AIC) in MrModelTest v2.2 [ 78].
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