molecular docking method

USAGE SUMMARY

The phrase "molecular docking method" is correct and usable in written English.
You can use it in scientific or research contexts, particularly in biochemistry or pharmacology, to describe a technique for predicting how molecules, such as drugs, interact with biological targets. Example: "The molecular docking method was employed to identify potential drug candidates that could effectively bind to the target protein."

✓ Grammatically correct

Science

Human-verified examples from authoritative sources

Exact Expressions

22 human-written examples

Binding mechanisms were studied using Molecular docking method.

Journal of Photochemistry and Photobiology B: Biology

Using the glide flexible molecular docking method, twenty structures were chosen for in vitro studies.

European Journal of Medicinal Chemistry

A major limitation in current molecular docking method is that of failure to account for receptor flexibility.

Journal of Molecular Graphics and Modelling

Using molecular docking method, we studied the binding of these drugs at an array of receptors present within the physiological system.

Pathophysiology

As a follow-up of our previous studies, and by using molecular docking method, we designed and synthesized a new series of 9-anilinoacridines containing phenyl-urea moieties as potential novel dual Src and MEK inhibitors.

Bioorganic & Medicinal Chemistry

This paper was designed to investigate the interaction of ethyl maltol with human serum albumin (HSA) under physiological condition by fluorescence, synchronous fluorescence, three-dimensional fluorescence, Fourier transformation infrared spectra, and molecular docking method.

Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy

Human-verified similar examples from authoritative sources

Similar Expressions

38 human-written examples

Pharmacophore search and molecular docking methods were used for construction of the molecular alignments.

European Journal of Medicinal Chemistry

The probable binding-mode of compound f7 was further analyzed carefully by molecular docking methods.

Bioorganic & Medicinal Chemistry

The known CB1 ligands are highly diverse structurally, so CB1 receptor may undergo considerable conformational changes to accept different ligands, which is challenging for molecular docking methods.

Journal of Molecular Graphics and Modelling

Homology modeling, structure based virtual screening and molecular docking methods have been used to find the novel inhibitory compounds against SecA activity at ATP binding region.

Bioorganic & Medicinal Chemistry Letters

The activities of 1,2,3-triazolo[4,5-b]pyrazine series of c-MET inhibitors were analyzed according to the three-dimensional quantitative structure activity relationship and molecular docking methods.

Bioorganic & Medicinal Chemistry Letters

Expert writing Tips

Best practice

When describing a specific docking protocol, clearly state the software and scoring function used to ensure reproducibility.

Common error

Avoid stating that the “molecular docking method” inherently accounts for receptor flexibility. Many basic methods treat the receptor as a rigid body, while advanced techniques incorporate flexibility. Acknowledge the limitations or the specific approach taken to address receptor flexibility.

Linguistic Context

The phrase "molecular docking method" functions as a noun phrase, typically serving as the subject or object in a sentence. Ludwig AI confirms its grammatical correctness. It is used to identify a specific computational technique within scientific discourse.

Expression frequency: Common

Frequent in

Science

100%

Less common in

News & Media

0%

Formal & Business

0%

Ludwig's WRAP-UP

The phrase "molecular docking method" is a well-established and grammatically correct term in the scientific community, particularly within computational chemistry and drug discovery. Ludwig AI confirms its accuracy and usability. Predominantly found in formal scientific literature, it refers to a specific computational technique used to predict molecular interactions. To enhance clarity in writing, consider using alternatives like "docking technique" or "computational docking approach". When using the phrase, avoid oversimplifying the role of receptor flexibility and always specify software and scoring functions for reproducibility.

More alternative expressions

Phrases that express similar concepts, ordered by semantic similarity:

docking methodology

Replaces "method" with a synonym indicating a systematic approach.

docking technique

Substitutes "method" with a more general term for a specific procedure.

computational docking approach

Adds "computational" to emphasize the use of computers, and replaces "method" with "approach".

in silico docking procedure

Specifies "in silico" to highlight the computational nature and uses "procedure" as a synonym for "method".

molecular docking protocol

Replaces "method" with "protocol", emphasizing a detailed plan or procedure.

computational method for molecular docking

Reorders the phrase to emphasize the computational aspect.

structure-based docking strategy

Highlights the structure-based aspect and substitutes "method" with "strategy".

ligand-protein docking simulation

Focuses on the interaction between ligand and protein, using "simulation" to represent the method.

virtual screening docking technique

Emphasizes the use in virtual screening processes, and uses "technique" as a synonym for "method".

computer-aided molecular docking

Highlights the use of computers in the docking process.

FAQs

What is the definition of "molecular docking method"?

A "molecular docking method" is a computational technique used to predict how a ligand (such as a drug) binds to a receptor (such as a protein), including its binding mode and affinity.

How is the "molecular docking method" used in drug discovery?

The "molecular docking method" is used in drug discovery to screen large libraries of compounds and identify potential drug candidates that can effectively bind to a target protein, thereby modulating its activity. This helps in prioritizing compounds for further in vitro and in vivo testing.

What are some limitations of the "molecular docking method"?

Limitations of the "molecular docking method" include challenges in accurately accounting for receptor flexibility, scoring the binding affinity of ligands, and modeling the effects of solvent and entropic contributions. These limitations can affect the accuracy of the predictions.

What other terms are used to describe "molecular docking method"?

Synonyms for "molecular docking method" include "docking technique", "docking methodology", and "computational docking approach". These terms can be used interchangeably depending on the specific context.