Sentence examples for molecular clock process from inspiring English sources

In addition, the heterogeneity of branch lengths resembles a relaxed molecular clock process, simulating heterogeneity among lineages.

If the molecular clock [16] governs the process of molecular evolution well, we can accurately estimate the times at other nodes given just a single reliable calibration point.

We employed relaxed uncorrelated lognormal for molecular clock model and Yule process for tree topology prior.

We used a HKY substitution model, selected by jModelTest [ 54], a strict molecular clock and a Yule process as tree prior.

We used the Blosum62 substitution model [ 8, 27] with no site heterogeneity specification, set a strict molecular clock, selected the Yule process [ 9, 28] for tree prior and ran Bayesian MCMC sampling every 1000 generations for 10 million generations.

Several such methods include the molecular clock and nonreversible substitution processes.

Priors included the strict molecular clock model with a Yule process for the model of speciation [ 53].

We estimated divergence times using BEAST v1.7.1 [ 53], assuming a relaxed uncorrelated lognormal molecular clock model, a Yule speciation process for tree prior, and a WAG + Γ substitution model.

One might think that a model containing a birth-death prior on the tree branching would necessarily be consistent with a molecular clock, since the birth-death process generates ultrametric trees.

Available programs such as BEAST [ 51] and mcmctree [ 52] apply in their relaxed molecular clock implementation different birth-death processes as priors on the node ages [ 53, 54].

The tree priors was set to Yule Process, and the molecular clock set to uncorrelated lognormal distribution.