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The modules were mapped to genes using the CRM activity database in [ 12] (Additional file 1: Table S4).
The genes corresponding to these modules were mapped onto standard Gene Ontology and other process and disease ontologies available in MetaCore™ [ 30].
For the example of the p53 network, modules were mapped onto KEGG pathways and pathway enrichment was calculated against the human genome through SubpathwayMiner [ 53].
The mouse consensus modules were mapped with the use of NCBI's Gene and HomoloGene resources against the human modules [ 57] and the node overlap was estimated only with respect to genes due to the lack of human miRNA expression experiments.
Second, genes making up the prognostic modules were mapped to a protein interaction network and many were shown to directly interact with genes known to be mutated in breast cancer (COSMIC) [ 14].
Similar(55)
However, the frequencies related to Int-3 and Int 14 are low because these modules are mapped against big complexes, which in turn emphasizes the differential performance of MCODE in comparison to CFinder.
DESeq2 and WGCNA module contigs were mapped directly in KEGG mapper (http://www.genome.jp/kegg/mapper.html).html
The transcriptome and proteome profiles were mapped into these modules, and significance was assessed against background distributions generated by network re-sampling (Methods).
Ethanol-induced ataxia QTL were mapped using the Interval Mapping module of GeneNetwork.
Ethanol-induced ataxia QTL were mapped using the Interval Mapping module.
Reads were mapped with the ABI LifeScope software's single fragment mapping module.
Related(20)
models were mapped
platforms were mapped
samples were mapped
components were mapped
modes were mapped
dimensions were mapped
nodes were mapped
elements were mapped
clusters were mapped
mode were mapped
modules were loaded
modules were ported
modules were extended
modules were connected
modules were measured
modules were operated
modules were developed
modules were introduced
modules were used
modules were based
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