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We assessed the genetic overlap between these 7 morphologic QTLs and the yeast eQTL modules we identified.
Moreover in each of these sub-networks (or functional modules) we identified some hub proteins.
In the 108 modules, we identified the 'hot links' that are essential for PCW synthesis.
Figure 2 shows the network with five highlighted subnetwork modules we identified (Louvain method [ 38]).
As seen in Figure 5, the modules we identified contain genes which also appear co-expressed in Genevestigator.
By simplifying the gene expression data into modules, we identified groups of genes that are related to fear related behavior.
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In contrast, under our sparsity prior, the modules we identify are identifiable (up to a sign-flip: the loadings on each factor can be multiplied by −1 without affecting its probability under the model, but this does not change which traits are associated with each factor).
Finally, from the gene modules we identify genes with specific association with either SCLC or NSCLC.
After partitioning the network into gene modules, we identify gene modules that have significant expression variation between lung cancer and normal lung tissues.
The modules we identify in C. elegans may be a general property of the nervous system, and, once identified, can be searched for in other species.
In the Turquoise module, we identified 59 hub genes, including 40 protein coding genes and 19 lncRNAs (Sup Table 4).
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components we identified
cycles we identified
modes we identified
nodes we identified
examples we identified
platforms we identified
clusters we identified
mode we identified
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package we identified
modules we found
modules we selected
modules we calculated
modules we performed
modules we applied
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