WGCNA identifies gene co-expression networks (modules), summarizing the main patterns of variation.
A breakdown of the functional categories of all KEGG modules containing newly reidentified modules is summarized in Table 3. shows total number of the KEGG modules containing branched modules.
For such modules, one can summarize the module expression profile by one representative gene: the module eigengene.
The top-scoring modules are summarized in Table 2 and Additional file 4. We reviewed highly expressed candidate genes and interactions modules 361, 429 and 414 in greater detail.
The expression profile of each module is summarized by a module eigengene, which is analogous to the first principal component of the module expression data.
Some typical modules were summarized in a recent review by Tyson et. al.[1].
We grouped these associations into 25 modules and summarized their information in Table 6.
Descriptions of genes highlighted in BC, HCC and CCA modules are summarized in Additional file 6.
Each module was summarized by the first principal component of the scaled (standardized) module expression profiles.
Each module was summarized by a single representative expression profile, which was referred to as the module eigengene.
