Wigwams modules can be viewed as the footprint of flux through regulatory networks under different conditions, and examining the abundance and functionality of modules for various combinations of conditions can provide insight into the commonality between the responses to different conditions at a more nuanced level than simple differential expression.
Existence of separate gripping and climbing modules allows application of various grippers for different profile shapes and sizes without any change on the climbing mechanism.
We dissected eight modules, which comprise of various nodes in the network.
Leucine, a branched-chain amino acid, stimulates muscle protein synthesis and modules the activity of various proteins involved in the control of mRNA translation [ 5, 6].
These core modules are comprised of various combinations of two to four putative transcription factor binding site (TFBS) classes associated with either developmental or stress-related functions.
The spatially conserved core modules are comprised of various combinations of TFBS classes that were annotated in cis-element databases with key words associated with growth and developmental (MADS box, MYBS/MYB-R1, AHBP/HD-Zip, DOFF, GTBX/MYB, MYBL), gibberellic acid (GA) response (GARP/MYB-related), abiotic stress and pathogen defense (GBOX/bZIP, MYCL/bHLH, NCS1, CAAT/NF-y) related functions.
This module is composed of various classes, the most important of which are illustrated in Fig. 1.
The workflow manager has been implemented using the jBPM workflow engine API for controlling the execution of various modules and uses the Apache ActiveMQ server for asynchronous message passing between the modules and workflow engine.
Eight series of experiments for two types of modules and various flow arrangements were made for accurate approximation of membrane resistance and gas/liquid mass transfer coefficients.
