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Compared with the microbial community networks of XKB, less modules in networks of MLB were significantly correlated with total phosphorous and total nitrogen.
This makes the use of our partition substantively meaningful - it reflects well the groups that operate within the network - but the method might yield uninterpretable results if the forces driving the formation of modules in networks are unknown.
Owing to these properties, ClusterONE is especially useful for detecting modules in networks with associated confidence values.
We divided the task into three steps: (1) We used RNSC [ 15], a local search algorithm that divides networks into nonoverlapping substructures to identify modules in networks.
Ample literature exists on how to detect biologically meaningful modules in networks but there is a need for methods that allow one to study the relationships between modules.
CFinder [ 14] was used for finding and visualizing concealed groups and modules in networks, based on the clique percolation method (CPM).
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Positive and negative interactions among modules in network AS, C1, and C2.
As stated in the previous work [ 8], delta is decisive in determining the final modules in network search.
A module in networks is a local structure characterized by more internal than external links.
Guimerà and Amaral [ 21, 22] identify modules in metabolic networks by maximizing the network's modularity using simulated annealing.
InfoMod is an information-theoretic approach to quantifying network modularity and revealing functional modules in large networks.
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