Sentence examples for modules from gene from inspiring English sources

A clustering method designed to elicit transcriptional modules from gene expression profiles, modulated modularity clustering (MMC; [51]), was used to construct putative transcriptional modules from the remaining transcripts associated with retinue response.

For example, Segal et al. [10] introduced a probabilistic method to identify modules from gene expression data, which not only identifies the co-regulated genes and the condition under which regulation occurs, but also their regulators.

The guide-gene approach is commonly used to explore functional modules from gene coexpression networks.

Lemon-Tree is able to detect regulatory modules from gene expression data using probabilistic graphical models [ 109].

Several computational methods have been developed to construct gene regulatory networks or modules from gene expression data [ 2, 4- 6].

These authors introduced prior information on genetic modules from gene function and pathway databases, which could be incorporated in our model in a similar way.

A module is defined by a set of genes with some biological property in common, we currently analyze Gene Ontology (GO) modules, KEGG pathway modules, modules derived from genes sharing a transcription factor-binding side (TFBS) in their promoter and genes sharing microRNA target motifs in their 3′-UTR [see ref. (1) for details].

In the future, we will focus on how to quickly excavate gene differential coexpression module from gene coexpression adjacency matrix.

The rank of | d ij | for a fixed i can be used for selection of genes belonging to the ith module from gene list.

Furthermore, we sampled equivalent gene module number and their gene module size with the real gene modules from the genes in subnetworks for 100 rounds.

A more recent approach by Torkamani et. al. [11] sought to identify cancer drivers by identifying an enrichment of rare cancer mutations within network modules reconstructed from gene expression studies.