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Exact(5)
For all modules found to have significant recurrence (FDR <5%), we classified their pattern of expression using cell- and gene-diversity.
Correspondingly, a combination of dynamic and static components had been observed in the sixty protein modules found to vary with the yeast cell cycle in [ 57].
A dendrogram of module dissimilarity was generated from a Pearson correlation matrix between the eigenvectors, and modules found to be at least 80%% similar were merged.
The hybridization artifact is not present in the modules found to be significantly enriched with genes differentially expressed between the amygdala and hippocampus samples in both strains, i.e. the Red and Pink modules.
It is worth noting that those modules found to be significantly down-regulated at the 5% level show a coordinated response beyond that expected by random chance, implying that they are relevant to the way in which M. smegmatis balances its metabolism in response to a single stress.
Similar(55)
Another regulatory module found to be induced at pH 6 comprises the genes cg1214-18.
Modules were tested for associations with HPI and LPI outcomes, and the signature comprised the largest module found to be oppositely regulated in HPI and LPI.
For S. cerevisiae, 131 modules were found to match S. pombe modules, with a reciprocal p-value < 0.05 (based on hypergeometric test and corrected for multiple hypothesis testing, see Methods).
In the postnatal modules, five genes from six breed-specific modules were found to be under strong positive selection, while no positively selected genes were found in the postnatal common modules.
The neutronic performance of the core relative to a single reflected module and a very large module is investigated and the use of modules is found to be a good choice.
The plasmid borne TA modules were found to be interspersed with the chromosomal TA modules of the same subfamily presenting evidence of the exchange between TA modules of the plasmid and chromosomes of different bacteria.
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