Sentence examples for modules found by from inspiring English sources
We used this definition also for hard planted partitions, since modules found by OSLOM may be overlapping.
The significance values of modules found by ambient are found empirically because the distribution of module scores for different sized modules is not known a priori.
Our results indicate that modules found by alignment using functional similarity exhibit higher functional coherence compared to sequence similarity-based alignment.
Figure 4 shows a subgraph of the PPI network and three modules found by the different methods, visualized with Cytoscape http://www.cytoscape.org/.org/
The modules from Zhang et al.'s paper generally include fewer genes than the modules found by GFlasso and often have similar annotations.
Although this is only one aspect of our analysis, we compared our module list to modules found by other studies of the CB map (Bandyopadhyay et al., 2008; Pu et al., 2008; Ulitsky et al., 2008).
The only module found by ReXSpecies 2.0 in the CR3 region includes Smad (left) and Klf4/Stat (right), matching the module proposed in Tomlinson & Chambers (2009) [ 47], Figure six therein.
Another COG module found by Spice contains COG0068 and COG0025, which are associated with expression of two hydrogenase uptake proteins hydrogenase maturation factor (HypF) and NhaP-type Na+/H+ and K+/H+ antiporters (Nhap).
In fact, BBK32(147–205) binds to the N-terminal type I modules found in Fn by the tandem β-zipper mechanism [20].
We summarized the information from stable, high-ranking modules found in different runs by constructing consensus modules that contained all the protein families found in similar modules in at least nine LDA runs.
The significance of the modules found is assessed empirically by looking at the scores of random sets of reactions and metabolites of the same size as the modules found Spuriously routes via highly connected currency metabolites (e.g. water, carbon dioxide or ATP) are minimised by the assignment of connectivity-dependent weights to their nodes in the bipartite network.
