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a Six modules extracted from coexpression analysis using 179 microarray data.
We counted the number of FFLs and negative and positive FBLs in each core network (Figs. 2D and S6A B; See also Fig. S13 for the demonstration of modules extracted from core networks shown in Fig. 2A C).
These were closely followed by modules extracted from a breast cancer specific compendium, which performed significantly better than modules from the human cancer compendium when evaluated across a clinically relevant TPR range.
For each of the validation schemes (Table 1) we constructed several module-based classifiers (BC, BCC, HCC, S456) based on modules extracted from the datasets indicated in the Features column of Table 1.
All the modules extracted from gene expression profiling data and used in the study.
Functional modules extracted from PPI data could represent e.g. protein complexes acting as a cellular machinery.
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Depending on the similarity threshold employed in the second phase, a false-positive module extracted from the first phase can be split into edge sets that do not appear frequently together in the graphs.
In addition, two intensely interconnected network modules were extracted from the network, where each module contains at least one known pathogenic gene.
Based on these annotations a set of modules are extracted from a set of distinct ontologies, and are made available for the user, for complementary annotation.
The loaded kernel modules information extracted from a memory image of the 3.1.0-7.fc16.i686.PAE system are listed in Fig. 9, and the symbols exported from the lockd module are listed in Fig. 10.
Moreover, since modules are extracted from the data by combining (parts of) gene sets, these may link additional genes to known pathways, which are relevant to disease progression in breast cancer.
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