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We also investigate the robustness of the various modules by examining the effect of node removal.
Next DetMod algorithm merges modules by examining a score we compute for each one of the extracted modules.
We validated these modules by examining their connectivity density, their functional enrichment in biological process GO terms and their coverage in protein complexes.
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Students begin the Species and Speciation module by examining the strengths and weaknesses of the biological, morphological, and phylogenetic concepts of species and sort populations of frogs into species using each concept.
We confirmed the macrophage specificity of this module by examining the enrichment of the core macrophage signal recently identified by the Immunological Genome (ImmGen) Project [ 41].
Next, we validated module 17 by examining gene expression by qRT-PCR and inferred that two putative uncharacterized proteins might be potentially related to heat stress.
For the selected tissue-selective genes, regulatory modules were detected by examining the promoter motifs and their relationships with transcription factors.
The nature of this possible functional module may be inferred by examining the functional enrichment of the annotated biclusters used to predict this set in each dataset.
By examining module articles in a stepwise manner, we develop a "lab meeting" atmosphere in the class, with experimental findings discussed as if they had been generated gradually by the students themselves.
The ability of the EMVC algorithm to successfully remove inconsistent cancer module annotations was verified by examining the overlap between EMVC filtered genes and genes that are designated by GSEA as core or non-core with respect to enrichment against the AML versus ALL phenotype.
We specialize our attention to reproducing C[z1,…,zd]-modules with U-invariant kernels by examining the spectrum and the essential spectrum of the d-tuple {Mz1,…,Mzd}, and deducing an exact sequence of C∗-algebras associated with Toeplitz algebra.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com