Sentence examples for modules and pathways from inspiring English sources

Significance of overlap between the modules and pathways from Panther, Kegg and MSigDB [89], [90], [91] was calculated with an hypergeometric test, P-values were corrected for multiple comparisons by calculating the false discovery rate using the Benjamini and Hochberg procedure [92].

A gene co-expression network can be divided into several substructures, including motifs, modules and pathways.

Those modules and pathways that have no mapping at all are omitted from each heat map.

The networks were clustered into modules, and pathways enriched in the modules (FDR ≤ 0.01) were identified.

All of the modules and pathways were converted to flat gene sets, so intra-pathway gene-level interaction data were not used.

It is plausible that biological modules and pathways are better conserved across the two species whereas expression levels of individual genes are not.

We showed that it can determine coherent pathways and regulatory mechanisms that connect genetic perturbations to target genes (in yeast and human data), as well as coherent modules, regulators and pathways in the yeast cell-cycle system.

Shotgun metagenomics reads were used for species taxonomic profiling using MetaPhlAn and assignments to functional modules, orthologs, and pathways through alignment to Kyoto Encyclopedia of Genes and Genomes (KEGG) using HUMAnN (10).

Towards this end, we will develop an analysis pipeline that will encompass development and utilization of statistical validation and analysis of data, functional module and pathway reconstruction, and dynamic network modeling.

Principal coordinates of between-subject distances were obtained from UniFrac [ 24] distances of OTUs and Jensen-Shannon and Bray-Curtis distances of KEGG (Kyoto Encyclopedia of Genes and Genomes) module and pathway distributions.

To assess functional modules and signaling pathways affected by NKX3.1, we performed a global analysis with the Ingenuity Pathway Analysis (IPA) package.