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For every predicted miRNA module, we collected the distances of adjacent unconventional target sites in each target mRNA.
Next, for every module we collected all the age indices of its k genes and counted the number of genes falling to each age interval.
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In the virtual screening module we collect both data from ligands in public ligand databases and from proteins structures in a PDB format.
To test the effects of these different particle sizes on PV-modules, we collected tephra samples from the 2010 Eyjafjallajökull eruption.
To assess the effectiveness of these modules, we collected and analyzed data on students' self-efficacy, abilities, and content knowledge.
In order to identify the tumor progression associated gene modules, we collected three datasets of breast cancer, GSE2034 [ 15], GSE7390 [ 16] and GSE11121 [ 17].
To investigate whether genetic variation between the two inbred strains could affect module detection, we collected SNP data from genes represented in the Magenta, Pink and Red modules (Table 1).
Based on the network motif module prediction results, we collected literature evidence from the NCBI and TRANSFAC [40] databases.
We collected modules from all methods under consideration, by selecting only those which were enriched with one of the two GO terms.
We collected 64 module outlines for the medical curriculum (2011) and 86 for three (Human Nutrition, Physiotherapy, Speech, Hearing and Language Therapy) of the four allied health curricula (2013).
We collected functional modules from five different data sources including Gene Ontology [9], BioCarta's curated pathway sets [11], CORUM's experimentally derived mouse protein complexes [28], and putative protein complexes identified from dense sub-networks derived from BioGRID's database of interacting proteins [29].
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