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Lastly, one SAMBA module (cluster <img src="http://journals.plos.org/plosone/article/asset?id=info?doi/10.1371/journal.pone.0013348.e084.PNG" class= inline-graphic"/> ) shows high overlap (among all enriched SAMBA modules) with the top-ranked DECOB module we analyzed.
Using the PennCNV detection module, we analyzed the autosomes of each of the 912 bulls for CNVs.
In order to determine if miR5640/AtPPC3 could represent a nitrate-responsive miRNA/TARGET module, we analyzed the nitrate response of the miR5640/AtPPC3 pair on a time course using RT-qPCR.
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To quantify the effect of CD on different motility modules, we analyzed the distributions of velocities from all cells at a given CD concentration in a specific phase (Fig. 8B D).
After addressing the evolutionary histories of the various components of GPCRs and their signaling modules, we analyzed them at system level by reducing the diversity of molecules into the main functional categories and analyzing their coevolution (fig. 5).
To understand the role of CpG content in our modules we analyzed three CpG content classifications from Mikkelsen et al(2007): high (denoted HCP), low (LCP), and intermediate (ICP).
To further investigate if gene expression provides useful information for the identification of mutated core modules in cancer, we analyzed data only from somatic mutations and CNVs.
To investigate the activation status of Cn/NFAT module in breast cancer, we analyzed the expression and subcellular localization of NFAT in 321 primary breast tumors representative of the four main molecular subtypes of breast cancer (See Supplementary Table 1 for patients clinicopathological characteristics).
To examine whether residency training and program characteristics were associated with CKD knowledge and investigate the effectiveness of an internet-based training module in improving CKD knowledge, we analyzed data from CKD training modules administered annually to U.S. internal medicine residents from July 1, 2005 to June 30 , 2009
Using students' self reports that they did or did not complete the modules, we again analyzed the effectiveness of the online modules on their exam 3 grades using the same criteria as above.
As an illustration of this absence of synteny between modules, we further analyzed the genomic organization of modules initially described in RGP99_XN, in the four genomes studied.
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