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The module was visualized by Cytoscape software [ 54].
The effect of diagnosis on gene expression was evident when gene expression in the salmon module was visualized directly.
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Finally, the shape variation corresponding to the association between modules was visualized using Partial Least Squares (PLS) analyses [ 54].
Modules were visualized as discrete colors and gene alteration frequencies were visually resized in proportion to alteration frequency across the 84 analyzed GBM cases.
The generated network modules were visualized in the software environment Cytoscape [23].
The pathogenic network and modules were visualized with Cytoscape (http://www.cytoscape.org/).org/
The networks from representative modules are visualized in Cystoscape [ 81].
The modules were visualized by classical multidimensional scaling in three dimensions.
The enriched protein interaction network modules were visualized using String network online analysis (http://www.string-db.org/newstring_cgi/show_input_page.pl UserId=nXWzWNEgLwwF&sessionId=Gfs9PMrT96ZB).pl UserId=nXWzWNEgLwwF&sessionId=Gfs9PMrT96ZB
Recently, reconstituted yeast Head and Middle Mediator modules were visualized by EM in a complex with pol II and a subset of general transcription factors (Plaschka et al., 2015).
Potentially relevant biological modules were visualized in Cytoscape [ 46] and were integrated with the known PPI from IntAct [ 47], where corresponding Uniprot accession IDs were extracted using BioMart [ 40].
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