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The contribution of molecules for activation of a significantly altered module was computed for time course and "ED and LD" analyses [see Additional files 1 and 2].
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This paper details an improved modeling technique for a photovoltaic (PV) module; utilizing the optimization ability of a genetic algorithm, with different parameters of the PV module being computed via this approach.
The list with Spanish words (vocabulary) and associated tags used by this module is computed automatically considering those signs that show the highest probability of being the translation of every Spanish word.
The proportions of differential biological processes in each module were computed.
'Module eigengenes', which represent a summary for all genes within a module were computed and subsequently correlated with HD.
The enrichment of both optimized and unoptimized cancer modules was computed for the acute myeloid leukemia (AML) versus acute lymphoblastic leukemia (ALL) phenotypes using CAMERA (Wu and Smyth, 2012).
Depending on the type of outcome variable, differences between modules were computed either with one-way analysis of variances (ANOVA) followed by Tukey's HSD post hoc tests for all pairwise contrasts or by chi-square tests.
GO modules were computed by MA and MDT.
Two sets of modules were computed with 10 000 network permutations and are shown in Supplementary Figures S2 S3.
For a module with k genes, a module score was computed according to the Stouffer's Z-score method: Z m = ∑ i = 1 k z i / k.
Module assignment was computed at several correlation thresholds (ranging from 1 to 6% edge density, in steps of 1%).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com