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For the design of the membrane module, the number of fibers within the module must be reasonably set as one of the design variables of the optimization problem.
For each module, the number of reactions and metabolites contained in that module are determined.
For each module, the number and the proportion of genes corresponding to prion subnetworks are shown.
Cluster frequency indicates, for a given module, the number of genes annotated over the number of all included genes.
The three last columns contain the enrichment p-value of the top module, the number of true positives (tp) and the proportion of genes in the top module annotated to the respective GO class (precision P).
We found that at 0.7 threshold, for 19 genes out of 22 in the fatty acid biosynthesis module, the number of "in" links is higher than the number of "out" links, and the same is true for 7 out of 8 leucine catabolism genes, and 9 out of 16 starch metabolism genes at the threshold of 0.8.
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By varying (i) the initial density of cells at seeding, and (ii) the dimensions of the modules, the number of cells per module ranged from 1 to 2500 cells.
Our approach relies on modular molecular receptors incorporating an intensely-colored aminoanthraquinone signaling unit equipped with both hydrophilic and hydrophobic modules, the number and size of which being configured in accordance with the targeted analyte and the sought detection method.
From early to top inception modules, the number of filters varies from 256 to 1024.
In each set, we obtained the number of modules, the number of significant modules, and the number of module genes in the significant modules (Table 1).
Gene to module assignments were first randomized, while preserving the total number of modules, the number of genes per module, and the number of modules to which each gene belongs as in Suthram et al. [ 16].
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