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Further extensions have been made to include distinct motif-to-motif transition probabilities in programs such as Stubb (Sinha et al., 2006), Module Sampler (Thompson et al., 2004) and BayCis (Lin et al., 2008), which also employs generalized, hierarchical HMMs.
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The CCD-based test strip reader was composed of six modules, including a light source module, sample module, power module, acquisition module, radiator module, and PC module.
Stent-graft module samples were scanned by X-ray microtomography and subjected to mechanical tests to generate finite-element models.
The PIE decoder module samples the input waveform and outputs the data symbols; it also provides a symbol clock, which rises whenever a symbol has been decoded.
Deposited particle mass and nicotine concentration was assessed on the Vitrocell VC 10 in the same way, in the range of dilutions 0.125 1.000 l/min (with a 5 ml/min exposure module sample rate by negative pressure).
Since the module samples at approximately 30 32 Hz, it induces a 0.5 second delay for a 32 tap filter; a 0.25 second delay for 16 tap filter, and so on.
Posttest data were separated for classes that used only the E. coli module (samples 2, 4, 6, 7, and 8 [ n = 76]) and for those that used both modules (samples 1, 3, and 5 [ n = 48]).
In addition, for module sample networks characterized by strong connections among nodes, we expected cor K, C) to approach −1.
The corresponding oncoprints for these modules are shown in Fig. S3 highlighting sample specific alterations in each module (samples are in the columns, altered genes in the rows).
To assess the effects of HD on module sample network topology, we calculated cor K, C) for CTRL and HD subjects in every module.
Toward this end, we make use of a second R function called ModuleSampleNetwork (and refer to the resulting sample networks as "module sample networks").
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