The module representation (Fig. 4a) indicates that PKC- and SRC-modules exert a positive feedback regulation on the FAK1/2 module.
Other distinctive features of NaviCell, compared to CellPublisher, are using markers for selecting entities on the map, decomposing the map into interconnected modules, systematic representation of entities' modifications and their roles in reactions, and a possibility to discuss each object on the map separately.
The module representations were fairly consistent across the majority of the bootstrapped networks (Additional file 5).
First, this module takes a representation of the pathway of interest and generates CALIS code adding all possible new links among genes within the pathway.
While our intuitive understanding of modularity is simple (from a designer's point of view) as "discrete entities whose function is separable from those of other modules" [ 10], the identification of modules from a representation of the system as a network is not straightforward.
Although the reported IR, IFN, or STAT1 module genes are not components of the HRneg/Tneg signature, one gene component of this index (CXCL13) correlates significantly with each of the 7 IR module genes, indicating surrogate representation of the IR-7 module within the 14-gene HRneg/Tneg index.
From the deployment generated by the scheduler, the code generation module generates a generic representation of the code in XML.
In later steps, it was also attempted to apply this mechanisms to the action execution module and for the representation of emotions, drives, and desires.
Representing the latter by its fundamental representation on the spinor oscillator module, one gets a representation of (mathfrak {osp}) and of all Howe dual pairs inside of (mathfrak {osp},).
To this end, the sequence of updates produced by the filtering algorithm is fed to a python module that builds a representation of a dynamic graph, namely an object that handles each of the updates and reflects the changes to its current structure.
Based on this representation and those in the other cIPS populations and V6A/MIP, the AIP module forms a distributed representation of combinations of the object's features that are important for grasping.
