Sentence examples for module preservation functionality from inspiring English sources

In this study, we constructed an R. capsulatus gene co-expression network, and took advantage of the module preservation functionality in WGCNA to identify R. capsulatus gene modules preserved in a collection of published R. sphaeroides mRNA expression data, and in a R. capsulatus proteomics dataset.

The function, module Preservation, in the WGCNA package was used to calculate the Z statistics.

To discriminate changes in modules comparing SZP and CTS, we performed a module Preservation analysis that identified which modules were preserved in both datasets.

We used the modulePreservation function from the WGCNA library to calculate module preservation statistics [ 31].

To assess the preservation of expression and methylation modules in the corresponding complementary data set, we use the network module preservation statistics described in [ 28] and implemented in the function modulePreservation in the WGCNA R package.

The modulePreservation function implements several powerful network based statistics for evaluating module preservation.

Supplementary Figure 4 Module preservation and replication.

(A) Module preservation (z-summary, x axis) as assessed in the 4 test datasets.

The module preservation of 18R modules in the B73 data was calculated, which can also be regarded as a differential network analysis.

First, the significantly changed proteins of B73 were used to calculate the "module preservation" of 18R as illustrated above.

Module preservation during iterative re-clustering of modules.