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We then expanded the module of interest by adding on to its members only direct neighbours of the full PCIT set (see Table S2 for module genes).
Our new downstream analysis computes the absolute average correlation of expression of TF across a set of genes, which themselves were identified by inclusion in a co-expression module of interest.
We thus chose module 3 as the module of interest for further analysis.
Users also have the possibility to leave one (or more) comments on each module of interest.
Genes present in at least 40% of the gene sets in the module of interest were selected for.
Double clicking the modules takes users to the module result page, with detailed information on the module of interest.
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The course will involve a mix of on-campus and off-campus students taking the course via distance learning, and professionals from a variety of organizations who will participate in specific modules of interest to them.
The Study Guide was designed based on instructional and learning principles with the aim of helping students to fill their specific knowledge gaps, i.e. by choosing the modules of interest, and to perform better when generating, managing or using food composition data.
Groups of greater than 50 genes were not considered as valid candidate modules, since the true biological modules of interest are of much smaller size.
In all methods, we did not consider groups of size greater than 50 to be valid candidate modules since the true biological modules of interest are of much smaller size.
Some modules of interest are discussed below to illustrate the validity of this analysis.
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