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Although this is only one aspect of our analysis, we compared our module list to modules found by other studies of the CB map (Bandyopadhyay et al., 2008; Pu et al., 2008; Ulitsky et al., 2008).
Confirm that no module is left after checking the module list.
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The protein interactions module lists protein interactions found in Escherichia coli (21).
Furthermore, module lists of a WGCNA analysis are available where the transcript data of all experiments were included.
In HT, the top scoring module listed genes are almost exclusively involved in cell communication (EGFR, VAV3 and RAC1).
The " genes expressed in" module lists the genes expressed in the tissue types defined in the pancreatic specimen/cell module, irrespective of their mode of regulation (whether they are differentially expressed or not).
Additionally, the module lists are saved as Matlab cell structures, enabling access to intermediate stages of Wigwams analysis, e.g. to identify the most statistically significant original smaller gene modules.
Fig. 9 Modules list Fig. 10 Symbols exported by lockd.
Four small modules (u11, u12, u13 and u18) linked to Hydrogen peroxide metabolism show up in the top 20 modules list (Table 1), each containing one reaction and one metabolite.
NCCT has licensed the Percepta software and uses all three modules listed above to populate internal databases.
Calmodulins were involved in both dioxin-sensitive and dioxin-enabled modules in a sub-network comprising 140 proteins (six modules listed at http://funcoup.sbc.su.se/zfish_calmodulin.html).html
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