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In case an experiment contained male and female samples, the dataset was split and each subset was treated independently throughout analysis, in order to ensure that the module detecting procedure is not affected by gender factor.
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Since eigengenes form a network, one can use a module detection procedure to identify modules comprised of eigengenes.
Even when modules are defined using a module detection procedure, cross-tabulation based approaches face potential pitfalls.
This transformation is useful for defining module detection procedures.
Furthermore, the module detects and filters refusal by the driver.
The SNP module detects SNPs and the CNV module detects CNVs across the genome.
The exact number of gene modules in any network was not considered essential because the number of modules detected is highly dependent on the clustering procedure settings.
We run the modules detection algorithm on the backbone of the PHPN, extracting the modules detected.
The above scheme is applied to all modules detected during Stage 1, with the sequential order of the modules maintained throughout the whole procedure.
The Perl module Procedures.pm contains procedures that guide the application through the general steps of the model generation process.
In contrast, of the eight modules detected in Synechococcus sp. WH8102, only two modules show such pathway-specificity.
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