Sentence examples for modulated gene list from inspiring English sources

In order to generate valid pathway or ontological enrichment scores, it is essential to relate the modulated gene list with the genes detectably expressed in the tissue of interest and not with the genome as a whole (or the entire gene-chip content).

This resulted in the generation of an LPS response, infected cell-modulated gene list of 1214 genes (hereafter known as the infected cell-modulated gene list).

The ability of the pathway analysis to predict phenotypes displayed by the Theileria-infected cell suggests that the infected cell-modulated gene list could be mined to highlight candidate novel pathways and genes that operate in its establishment and maintenance.

Enrichment analysis was performed using the GO Term Finder available at < http://go.princeton.edu/cgi-bin/GOTermFinder> for searching for significant shared GO terms to describe the gene list of the significantly modulated genes (p<0.05).

An arbitrary cut-off of log2 ratio between intensities obtained for irradiated samples versus unirradiated controls can be fixed to extract a list of potentially modulated genes.

All the significantly modulated genes in any of the pair wise comparison of interest are listed in Additional file 1.

A complete list of significantly modulated maps per MetaCore analysis can be found as part of additional file 2. aThe significantly modulated genes, metabolites and integrated data of the TCDD-exposed HepG2 were used as input.

Since our criteria for selecting a TF was the presence of a well-defined DNA binding domain that selectively modulates gene transcription (for example, bHLH or homeobox), we manually inspected the above list of putative TFs.

Thus, these proteins modulate gene expression both transcriptionally and post-transcriptionally.

Molecules modulating gene transcription during muscle wasting in cancer, sepsis, and other critical illness.

It has previously been suggested that probiotics alter the microbial composition, which could modulate gene expression in the brain14.