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Transcriptionally modulated ORFs were linked into the large-scale probabilistic network [17].
Similar(59)
ORFs were predicted by using RAST v2.041.
Putative ORFs were predicted by submitting to NCBI ORF finder.
The genome-wide expression levels of the BER modulated strains were compared to wild type yeast and the differentially expressed genes were identified (see Materials and Methods); a total of 633 ORFs were identified with statistically significant changes compared to wild type yeast in at least one condition (Fig. 4, Dataset S1).
ORFs were detected with ORF finder [ 44].
c Pseudogenes, unique ORFs and intron ORFs were not considered.
ORFs were subsequently corrected manually.
Otherwise, both ORFs were considered.
Open reading frames (ORFs) were identified using ORF finder [ 45].
Unique ORFs and intron ORFs were not taken into account.
ORFs were annotated using blastx.
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