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The section on modularity I had no problems with although again the authors don't present a general theory for how modularity depends on all parameters, but rather just present a few illustrations in which one parameter is varied.
The threshold of meaningful modularity depends on the purpose and may be above or below Q'R =0.
We use this matrix predominantly to generate graphs with defined functional modules, and study how modularity depends on a number of different parameters.
Authors' response: Just like you, we would also very much appreciate a general theory that predicts how modularity depends on all parameters.
We can also investigate the impact node fusion has on modularity, for the modularity measures Q N and Q H, by studying how modularity depends on module strength in networks grown with different node fusion probabilities.
On the one hand, because node duplication brings with it the duplication of the edges that the duplicated node is attached to, whether or not node duplication leads to an increase in modularity depends on whether the network sports more inter-module or more intra-module edges.
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Although the modularity score depends on the community structure, similar modularity scores may arise from different community structures.
As a result of filtering interactions and modules by confidence levels, the heterogeneity of modularity maps that depends on both methods and interactome datasets may be reduced according to a better control of the uncertainty levels.
Our findings indicate that the results of a given modularity analysis depend on other factors beyond the chosen system, metrics, and the applied modularity technique.
To study how the different modularity measures depend on the number of modules in the network as well as the strength of the module's interconnectivity, we generate networks with a tunable amount of modularity.
The Dell system's quick response time depends on "modularity," a basic building block in the computer industry.
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