After modifying or filtering an alignment (or without modification), the MAF Coverage Stats tool allows viewing coverage information about the remaining blocks in reference to a particular set of intervals.
Clumps could be packed into a desired geometry while dynamically modifying their alignment based on experimental data sets defining the atria's fibre orientations.
This approach consists in introducing a wavefront curvature Φlens x,y) on the beam incident on the SLM by modifying the alignment of the first beam expander.
By modifying our alignment protocol to systematically detect pseudo-templated nucleotides at transcript 5′ ends, we observed that up to 15% of S. agalactiae TSSs were associated with a reiterative transcription (Additional file 2).
In order to compare block groups, the constituent blocks are first compared using a modified sequence alignment algorithm to determine similarity scores for pairs of blocks.
This statistical method, Tesserae, uses a hidden Markov model to find homology, a product of approximate conditionals (PAC) likelihood [ 17] to estimate the recombination parameter, a modified global alignment algorithm (Needleman-Wunsch) to detect mosaic recombination [ 18], and the BLOSUM62 matrix is used for amino acid transitions.
A general technique for modifying energy level alignment at organic organic heterojunctions is introduced, and is demonstrated here for phenyl-C61-butyric acid methyl ester (PCBM) and N,N′-Di-[ 1-naphthyl -N,N′-diphenyl]-1,1′-biphenyl -4,4′-diamine (α-N,N′-Di-[ 1-naphthyl -N,N′-diphenyl]-1,1′-biphenyl -4,4′-diamine
Moreover, this approach allows modifying the band alignment from type I to type II in both the CB and the VB.
In this paper, we demonstrate a modified coarse-fine alignment scheme designed for proximity lithography.
Thus, we tried a modified alignment score SL that penalizes sparsely distributed matches compared to locally enriched 'match blocks'.
AMTP sequences generated for this study (Additional file 4) were included in a modified alignment from [ 10] and phylogenetic analysis was performed as in [ 10].
