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The ontogeny profile of CYP3A5 was modified from the default setting to an expression pattern according to reported data.
The dual-echo EPI sequence was modified from the default single-shot GE-EPI of the Siemens apparatus to acquire images at the two echo times of 13 and 38 ms, which were determined as the shortest echo times possible.
It was seen that the threshold value for a "MAR potential" had to be modified from the default values to 50 in order to get a better noise to signal ratio.
The sample-introduction device for ICP MS was modified from the default settings as follows: a PFA μflow of 50 μL min−1 was used as a nebulizer, the double-path Scott type spray chamber was cooled to −5 °C, a 1.0 mm dimmer injector torch was used, and additional O2 (0.1 L min−1) gas was mixed with the argon axial gas flow via a T-adaptor.
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To ensure reproducibility of our reported methods, no parameter was modified from the classifier's default setting from Weka's downloaded code.
This aligner (BWA-MEM) performs a lot of soft-clipping (unless the settings were modified from default, in which case the authors should state this), which causes two major issues.
Visual inspection was used to assess the default clustering of each SNP, and calls were modified when the default clustering of a SNP was not clearly defined.
RLSB, as a regulator of rbcL gene expression, provides a new insight into how one component of this extensive photosynthetic regulatory system might have been modified from an original C3 "default" function to perform the same function, but in a more specialized fashion, in C4 plants.
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In order to obtain maximum number of motifs the default setting was modified from 3 motifs to 20 motifs.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com