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For this purpose, we analyzed test samples by aligning their microarray profiles against the annotated and normalized GeneSapiens microarray reference database and applied a slightly modified alignment of gene expression profiles (AGEP) method - weighted AGEP (wAGEP) - which we recently developed and described for classification of cell differentiation patterns [ 22].
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The multialignment of overlapping reads to each reference read is used to detect likely sequencing errors and modify alignments accordingly.
Construction of the portion of Interstate 78 built between Exit 11 (County Route 614) and Exit 13 in Union Township, completed in 1962, modified the alignment of U.S. Route 22 between these two points.
The presence of that additional light changed the speed at which light waves of different wavelength zip along to modify the alignment of the waves.
The construction of Interstate 15 (I-15) in the Parowan area caused the state legislature to twice modify the alignment of SR-143.
This approach consists in introducing a wavefront curvature Φlens x,y) on the beam incident on the SLM by modifying the alignment of the first beam expander.
The algorithm is easily modified for local alignment of read patterns by including the beginning of a new local alignment (with score 0) in the recursion (6), analogous to the Smith Waterman sequence alignment algorithm.
Alignment icon: Modifies the alignment of the selected objects.
To test the performance of an alignment program or the influence of program parameters on performance, we removed all gaps from the datasets, realigned them by the program to be tested, and scored the new alignments by a modified sum-of-pairs score (SPS') and the structure conservation index (SCI).
The pseudocode of the modified SW alignment kernel is shown in Figure 5.
We modified the alignment graph to store the relative orientation of the matches as reported by Nucmer for each edge.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com