To verify our modification, we compared total emissivities obtained by calculated spectral emissivities with those obtained by measured spectral emissivity for several literature.
To investigate the UV degradation of PCL fibers after modification, we compared the molecular weight and mechanical properties of as-extruded PCL fibers and PCL-alkyne after irradiation with UV light.
To determine which of the Miz-1 bound genes are enriched in the H3K27me3 silencing histone modification, we compared genes bound by Miz-1 with genes previously reported to contain significant H3K27me3 in human ES cells [ 32].
To investigate the effectiveness of the proposed modification, we compare the performance of BRGA under both the original and the modified penalty functions.
To examine whether each group was affected by incentive modifications, we compared the cooperation ratios between the conditions.
To investigate if there is a relationship between the expression state of Stat3 and c-Myc targets and co-occupancy by pluripotency factors, polycomb group proteins, and histone modifications, we compared Stat3 and c-Myc target genes with Nanog [17] and Eed [29] target genes, and genes with AcH3 (this paper) and H3K4/27me3 [30] histone marks.
To investigate any additional bias introduced by these modifications, we compared bias of strand, transcript coverage by position, transcript length and GC content for these two methods.
To detect evolutionary modifications, we compare the value t i j to the number of nucleotide co-occurrences after switching i and j across the two species (i.e., the value t j i ).
To assess the effect of the 5' modification reaction, we compared the hybridization properties of eight control probes lacking the 5'-modification versus their modified counterparts on two substrates that did or did not supply reactive groups for covalent bonding, namely SuperAldehyde® (Telechem) and GAPS™II (Corning), respectively.
To evaluate the degree of co-occupancy between Stat3 and c-Myc promoter binding and pluripotency-related TFs (Oct4 [17], Sox2 [16], Nanog [17], PcG proteins [29] (Eed, Rnf2, Phc1, and Suz12), and genes with bivalent histone modifications [30] (H3K4/27me3), we compared our Stat3/c-Myc target genes with published ChIP-chip and ChIP-seq studies in ES cells.
To evaluate the effect modification, we systematically compared effect estimates on different levels of covariates.
