Recently, while studying sumoylation [28] and palmitoylation [31], we classified modification sites based on either experimentally determined or putative linear motifs.
For ChromHMM, we calculated the sufficient number for the human data according to the procedure described before, and we classified epigenetic modification data into seven states rather than six so as to identify a state similar to K27HMD.
To investigate RNAPII modifications or PRC genome-wide, we classified each gene as positive or negative for each marker at TSSs and/or TESs (Table S2).
Sensitivity analyses suggested that effect modification by previous-winter mortality persisted when we classified winter mortality into four (vs. two) groups, although power was limited to estimate stratum-specific effects.
In order to include a manageable number of diseases, we classified all the patient diagnoses (International Classification of Diseases, Ninth Revision, Clinical Modification (ICD-9-CM) codes) made by the GPs during the study year into Aggregated Diagnosis Groups (ADGs).
The second modification we made is that we did not classify all unlabeled instances at each iteration; instead, we classified only a fixed subsample of the unlabeled data, as proposed in the classical co-training algorithm [ 38].
We classified the records into syndromes by using the International Classification of Diseases, 9th Revision, Clinical Modification (ICD-9-CM) to syndrome mapping defined by the ESSENCE system (7 ) and used only 351,749 records for which persons were classified as having a respiratory syndrome.
In the current study, we classified pet dogs with naturally-occurring obesity on the basis of presence of ORMD (using a modification of criteria used for human metabolic syndrome).
We classified entrainment ratio.
We classified all 12 as normal.
