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The 719 predicted positions of modification (listed in Additional file 1) from the seven species were mapped onto the universal alignment and then located on secondary structure maps of 16S and 23S rRNA (Figs. 1 and 2).
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In the software algorithm, all modifications listed in UniMod are searched simultaneously with the tolerances specified as ±0.05 Da for peptides and MS/MS fragments (Shilov et al., 2007).
All modifications listed in this table are significant at a q-value of 0.05 and a complete list of all modifications with their mean counts and empirical p-values and q-values are in Additional File 1.
No protein modifications listed in either the ABRF Delta Mass database (www.abrf.org/index.cfm/dm.home) or the Unimod database (www.unimod.org) could give rise to the three observed species.
The four modifications listed in the top two rows of Table 2 indicate a sufficient rule modification by adding x j as a new regulator for each of the four combinations of states of nodes x i and x j at time t.
Any state σ of a discrete time Boolean network may be modified to be a steady state of the network through application of the rule modifications listed in Table 2 if no node is regulated by every undamaged node in the network and if the future state of every node depends only on the current state of other nodes.
The data from contact angle measurement, before and after surface modification, are listed in Table 1.
The most important modification are listed in table 4.> Ethical approval for the original protocol and included amendments (Version 5) is obtained from the following review boards: Oxford Tropical Research Ethics Committee OxTREC (Ref number 1014 13) and the Human Research Ethics Committee of the Northern Territory Department of Health, Australia HREC (Ref Number 13 1991).
The details of the surface modifications are listed in Table 1.
The sequences of GR1 and GR2 with the above modifications are listed in Figure 1B.
The major modifications are listed in Table 1 [20,21].
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