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The phenazine biosynthesis and modification genes are present except for phzH, which encodes a modifying enzyme that converts phenazine-1-carboxylic acid to phenazine-1-carboxamide.
Most of the translation genes are ribosomal proteins, and most of the protein modification genes are kinases.
Once integrated, the int and O-antigen modification genes are located at opposition ends of the phage DNA, ending with attL and attR sites.
Additionally, the glucosyl or the O -acetyl modification genes are carried by bacteriophages, which mediate serotype-conversion by integrating into the host chromosome [ 3].
Other cell wall modification genes are present, including two pectinesterases (At2g43050, At2g45220), one of which is the most strongly differentially-expressed gene in the list.
Proteasome and tRNA modification genes are co-transcribed, revealing that a number of additional enzymes are co-regulated with proteasomes at the transcriptional level in the same species (Gil et al, 2007).
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Three additional essential RNA modification genes were identified in S. aureus, rimM, ymfA and thdF.
Consequently, differential expression of cell-wall modification genes is expected when fungi are exposed to stress-related conditions.
An RMS was identified as present when both the restriction and modification genes were present and adjacent on the chromosome.
Some transcription factors and cell wall modification genes were also differentially transcribed, as were genes involved in secondary metabolism (phenylpropanoid pathway and terpenoid synthesis).
Most of the comparative genomic analysis to identify putative RNA modification genes was performed in the integrative SEED database[ 167] at.
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