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Monophyly of F. teydea and F. coelebs populations receives moderate support with Bayesian Inference (Figure S3, node A).
However, most nodes within the major five clades have weak to moderate support with frequent polytomies.
Although only three proteins from these clusters could be analysed, in all cases subclade IIIB is allied to subclade IIIA with weak to moderate support, with greatest support seen in the P phylogeny (Fig. 3).
In two cases, all analyses but RY resolve relationships (although often with only moderate support), with RY producing a polytomy that does not conflict with the resolutions found in the other analyses.
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Lastly, the rhizarian Thaumatomonas sp. branched with alveolates and stramenopiles with weak to moderate support values, consistent with a previous study based upon >100 concatenated protein sequences [14].
A clade consisting of all homologs from alpha proteobacteria was recovered to be the closest sistergroup of the Clade E with a moderate support value (0.73/54) with all the homologs of other diverse bacteria being its outgroups.
All phylogenetic analyses -albeit with moderate support- identified two main clades, each with various subclades.
Instead, Myrionecta and Tiarina (class Prostomatea) formed a clade with moderate support that was sister to Mesodinium (class Mesodiniea) with strong support.
In contrast, in the RY analysis, Liliales are placed in a clade with Asparagales + Commelinidae with moderate support (69% BS; Figure 7).
Our analysis groups N. microlepis species complex with N. virgatus although with moderate support and we are unable to identify the ancestral morphotype.
However, one of the ARMAN bacteria, Candidatus Microarchaeum acidiphilum ARMAN-2 is nested deeply within aSelBL, grouping with the Crenarcheaota clade with moderate support (0.96 BIPP, 74% MLBP, Figure 1).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com