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The models were visualized using Rasmol tool.
3D models were visualized using Chimera [20].
Homology models were visualized and molecular graphics images produced using the UCSF Chimera package from the Resource for Biocomputing, Visualization, and Informatics at the University of California, San Francisco (supported by NIH P41 RR-01081)[16].
Models were visualized and analyzed using the program PyMOL.
Models were visualized using MacPyMOL (DeLano Scientific LLC).
Structural models were visualized with the VESTA and CrystalMaker packages.
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Models are visualized by projecting virtual beams of light through these volumes, and the light rays are affected by the voxels based on user-defined rules.
Optimal virtual trails generated from the models are visualized and animated as if they were actual trails of individual users in order to highlight behavioural patterns that may foster social navigation.
FEATURE models are visualized using "fingerprints", which are color-coded grids that depict the significance of each property in each shell (see Figure 1c).
The complement of shared and unique reactions between the three Pseudomonas models is visualized as a Venn diagram in Figure 4.
The coincidence of CNVs and corresponding genes identified by the different models was visualized by means of the Pangloss Venn diagram generator (VENNY [ 67], http://www.pangloss.com/seidel/Protocols/venn4.cgi and GeneVenn http://genevenn.sourceforge.net/vennresults.php).php
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