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In addition to 2007 and 2006 models, we allowed 2005 model cars on the list, since dealers are still selling them as new.
In the models, we allowed for stratification (see [36]) according to colony, in order to control for any variation in the shape of the hazard function between colonies, potentially due to spatial variation in ecological factors.
In the Poisson regression models we allowed for over-dispersion.
In most models survival probability was constant between years, in two models we allowed survival probability in the last time period to differ from the earlier time periods.
For mapping RNA-seq reads to transcript models, we allowed for redundant hits (-an option) so as to maximize the signals from the RNA-seq datasets for the purposes of calculating differential gene expression, where redundant hits should not significantly affect the analysis, as each gene model was independently tested across conditions.
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The data we allow them to use and the models we allow them to calculate should all be areas where humans have a voice.
Although we strongly encourage students to work together as they reconstruct the published models, we allow students to work together or separately on the extensions, depending on their personal preferences.
In our specification of the a priori model, we allowed for nonlinear path relations using the composite modeling process described in [18].
To avoid overfitting of the model, we allowed a maximum of one variable per each 10 events.
Hence, in the model, we allowed Set to be different for different cueing conditions.
Because of the complexity of our model, we allowed parsimony to dictate the results presented.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com