Sentence examples for models was minimized from inspiring English sources
The parameters to define the complementary vertex-pairs for the three surface features were optimized in conjunction with changing the distance cut off in the definition of the interacting region, from 1.0 Å in the original study 35 to 3.0 Å, so that the difference between the complementarity scores of the energy-minimized and nonenergy-minimized models was minimized.
The cognitive dissonance between virtual and real models was minimized by using a 3D CAD model, and the virtual model of optimum solutions in this study employed a rapid prototyping machine to generate real models efficiently.
The uncertainty in the reconstruction of scaffold models was minimized adopting several local and global segmentation strategies (exhaustive details can be found at http://rsbweb.nih.gov/ij/).
Both solvent and homology models were minimized until a convergence of 5e−3, using a conjugate gradient minimization.
Finally the models were minimized without constraints.
Finally, the top DFIRE-scoring models are minimized and scored using CHARMM, as described above.
The dimeric models were minimized for 2000 steps to remove structural clashes using the conjugate gradient algorithm.
The resulting models were minimized by ENCAD and SCWRL3.0, and subsequently the iterative density calculation was again applied to cyclically remove outliers and re-cluster, and finally select the centroid for each of the five largest clusters.
Models were minimized by removing non-significant terms (P > 0.05), beginning with the interaction.
In this way, statistically suboptimal, manual alterations of models are minimized.
Finally, both models were minimized (50,000 steps) and a trajectory of 1 ns was obtained by molecular dynamics using the CHARMM force field [ 70] in NAMD program [ 71].
