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Our framework, then, models the evolutionary clustering problem by hypothesizing that it should not depart too much from the community detection problem.
One method of generating niche models, the evolutionary computing algorithm GARP, uses a variety of rule-building methods in an iterative machine-learning process to generate rule sets [36].
Imagine we are given a set of 'true' gene trees and a 'true' reticulate network that models the evolutionary history of these genes.
We have developed a method that models the evolutionary rate of a coding sequence within the context of the protein's 3-dimensional structure.
This transducer, shown in Figure 6, models the evolutionary history of insertions and deletions in order to infer a DNA sequence alignment, but also identifies slowly evolving regions represented by three slow states (colored in blue).
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Advances in modelling the evolutionary process now allow such inferences to be made from phylogenetic trees.
That's much more difficult, because it is hard to measure or model the evolutionary process at work.
Quasispecies theory has emerged as an important tool for modeling the evolutionary dynamics of biological systems.
Its first reactor, which began operating in 1977, was rated at 900 megawatts; its latest model, the evolutionary power reactor (EPR), is a 1,600-megawatt 1,600-megawatt
Studies modeling the evolutionary relationships between the Rad51, Dmc1 and RadA proteins indicate that they are monophyletic, or that they share a common molecular ancestor.
Nevertheless, because our model is analytically tractable, we believe it is a useful and important initial approach to mathematically modeling the evolutionary aspects of the SOS repair pathway.
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Justyna Jupowicz-Kozak
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