Sentence examples for models selected with from inspiring English sources

Analyses were run for 100 million generations using the nucleotide substitution models selected with JMODELTEST GTRR + I + G [ 56]).

The evolutionary model used for all data blocks in RAxML was GTRGAMMA, while the Garli settings were adjusted according to the best-fit models selected with PartitionFinder.

Evolutionary models selected with jModelTest were Tamura-Nei 93 + I + G (accounting for rate heterogeneity across sites via a Gamma distribution with a 0.327 alpha parameter and including 41% of invariant sites) for hosts (18S + ITS), and CpREV + G + F (using observed AA frequencies, and a 0.78 alpha parameter) for the alignment of virus protein sequences.

The model selected (with lower AIC) was the most exhaustive model and includes phylogenetic relatedness, all climate variables and interactions between each variable.

In each case we used the substitution model most closely resembling the model selected with MrModelTest.

The model selected with jModelTest was implemented, but parameters were estimated simultaneously with the BEAST analyses.

The analysis used the composite model selected with the AICc, with all parameters unlinked among partitions.

For TraG, the best model selected with ProtTest3 was LG+G+I.

Phyml v2.4.4 [ 45] was used with the online web server [ 46] for maximum likelihood analysis using the GTR+I+G substitution DNA model selected with ModelTest [ 47] and JTT substitution model selected with ModelGenerator for the protein analyses [ 48].

All analyses used the composite model selected with the BIC, but parameter estimates were re-optimized during the ML search.

However, in all cases, the Akaike weights indicated good support for the model selected, with the best models being 50-10050-100%– 2 timore more likely than the next best model (Additional file 1).