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These examples provide a clear demonstration of how proteomic evidence can support and refine gene models predicted from sequenced genomes, lend weight to predictions and help reconcile different potential gene structures in the annotation process.
The temperature distributions of the models predicted from the transient heat analyses are compared with experimental results and show good agreements.
Gene models predicted from reference-guided mapping were BLAST searched against Arabidopsis protein data base.
Gene models predicted from contigs that could not be mapped against the Chiifu genome were annotated separately.
StuPPO5, StuPPO6 and StuPPO7 are three novel PPO-like gene models predicted from this S. tuberosum genome sequence analysis.
Figure 4 contains 4 example clusters with associated peptide identifications and illustrates the cluster redundancy with considerable similarity in the different gene models predicted from the various pipelines.
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The (0 0 1) surface forms a (1×4) reconstruction that is well explained by an 'ad-molecule' model predicted from density functional theory calculations.
For N. americanus, we were able to identify additional exons upstream of the comp-1 gene model predicted from NECAME_15795.
The position of this motif immediately after the catalytic domain fits well with the model predicted from the crosslinking results.
If the unigene has an overlap with a gene model predicted from the genome sequence, then a link to the gene is provided on the primary annotation page.
To investigate further whether rice chromosomes 11 and 12 were related to each other and arose by a WGD event, we compared each gene model predicted from these two chromosomes against 586,577 wheat ESTs.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com