Sentence examples for models predicted by from inspiring English sources

Once the regions were determined, gene models (predicted by the Gnomon gene prediction tool) were downloaded using BioMart that were subsequently annotated using the P. trichocarpa version 3 annotation information.

Including the ab initio map at the NCBI Bos taurus MapViewer [ 31] into our analysis we identified fifteen ETS with sequence similarity to bovine gene models predicted by the gnomon gene prediction program.

Comparative sequence alignments using BLAST tools on the bovine and human genome NCBI genome annotations (accession date 16/04/2013) revealed 62 putative protein coding transcripts (Additional file 2) supported by ab initio bovine models (predicted by the NCBI eukaryotic gene prediction tool, GNOMON and 20 pseudogene transcripts.

Recently completed assessment of automated servers for protein structure prediction (CASP 7) [3] reveals the power of post-treatment of models predicted by individual fold recognition methods through consensus predictions (For example, ROBETTA [4], Pmodeller6 [5], Fams-ace [6]) and/or constrained template-fragment recombination and refinement (For example, Chunk-TASSER [7], I-TASSER [8]).

Gene models predicted by AUGUSTUS were more abundant but significantly shorter than MAKER-predicted models, and in some cases, single genes were classified as multiple genes.

The sum of Z-scores of all first (i.e. TS1) models or the best of five submitted models predicted by these predictors was reported in Table 2. Other human server predictions were not considered in the analysis here since they were not publicly available.

The experimental data showed an autocatalytic behavior of the reaction, which is explained by the model predicted by Kamal.

The best model predicted by LOMETS was selected for analyses.

Moreover, the model predicted by Phyre2 also has a HORMA-like structural core (not shown).

BMI category was imputed using an ordinal logistic regression model predicted by gestational length, infant mortality, maternal age, parity, and year of birth.

Under controlled conditions, the close agreement between the forward model predicted by cSFDI and experimental results suggest this technique is an accurate method for predicting the effect of light structure on speckle contrast.