Figure 1: Two models of protein trafficking through the Golgi.
Researchers can then use these maps to generate atomic models of protein structures.
Darriba, D., Taboada, G. L., Doallo, R. & Posada, D. Prottest 3: fast selection of best-fit models of protein evolution.
Computational models of protein folding and ligand docking are large and complex.
We have developed such an efficient algorithmic framework for genome-scale models of protein synthesis.
These data are then used as restraints to generate topological models of protein complexes.
The availability of high-throughput genomic databases that establish protein dispensability, expression and interaction networks enables rigorous tests of competing models of protein evolution.
C) BACH energy distribution for the 20 NMR models of protein 2K49 (set T0472 of CASP8), and for the structures obtained by 1ns of MD simulations for model #1.
Of the three models of protein localization in bacterial cells cited (Fig. 8), namely targeted insertion, selective degradation, and diffusion/capture31, our results revealed that CadC is localized by a diffusion/capture mechanism dependent on the DNA.
The model also shows that high-dimensional structures provide conceptual relations between different models of protein folding.
R. Ghosh and C. J. Tomlin, An Algorithm for Reachability Computations on Hybrid Automata Models of Protein Signaling Networks, Proceedings of the 43rd IEEE Conference on Decision and Control, Atlantis, Bahamas, pp. 2256--2261, December 2004.
