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Figure 14 Performance of global models mapped to chemical space.
Importantly, under the state-space approach, the interesting philosophical work of characterizing theory structure (e.g., as classes of models), theory meaning (e.g., data models mapped to theoretical models), and theory function (e.g., explaining and predicting) happens at the level of mathematical models.
Subsequent to the February, 2010 release of our initial version of classical maize gene list to the maize genetics community, maizesequence.org released a list of gene models mapped to named loci in the MaizeGDB database using the Xref computational pipeline (http://www.maizesequence.org/info/docs/namedgenes.html).html
We used E. grandis gene names wherever the predicted models mapped to the E. grandis models.
The majority of rice chromosome 11 gene models mapped to group 4 chromosomes of wheat indicating their common origin.
The program does not carry out clustering analysis of gene models mapped to this virtual pseudomolecule since the gene models are unassembled and their spatial locations are unknown.
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Many models map to model 170 (Becker-Weimann et al., 2004) which focusses on the positive feedback loop of the circadian cycle oscillator.
E. grandis gene models mapping to E. camaldulensis predicted gene models were obtained using a BED file of the predicted gene coordinates in BEDTools package [ 44].
While several of the predicted gene models map to E. grandis gene models there were however several predicted gene models E. Camaldulensis that did not map to E. grandis gene models.
Sequence analysis showed these gene models map to six positions on four chromosomes (3, 9, 11 and 17), suggesting six PSY genes are present in the apple genome [ 59].
Genes in the Chiifu genome were assigned to the same subgenome as the one published if the new gene model mapped to the same coordinates [ 3].
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