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The models generated this way were analyzed for charged patches using an in-house script.
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The initial model generated this way is refined within the "traditional" ADL-based flow.
The STL models generated using this new methodology were compared to commercial computer-aided design (CAD) models.
The aspen community models generated using this approach identified specific genes and subnetworks of genes associated with variable sensitivities for aspen clones.
We observed that for the models generated in this study and previously published, the ROC values were comparable (Table 2).
Following the ph4 models generated in this study, potential σ1 binders could be virtually screened from our recently developed natural product libraries from African medicinal plants [50 53].
All of the images and models generated in this paper used the 45 µm cubic voxel data set.
Models generated with this pipeline have two key features.
The structural models generated in this study were viewed in PyMOL http://pymol.sourceforge.net or Sybyl.
The domain structure models generated using this approach were then used to identify possible ING-like proteins in model species for which interaction data is readily available.
However, in order to evaluate rigorously such an approach, it will be important to validate the models generated in this study prospectively.
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