Sentence examples for models from genomic from inspiring English sources

The PhygOmicss pipeline works on a single transcriptome set, but can be applied to transcriptomic data from multiple tissues/organs, or gene models from genomic sequence data.

We summarize the methods employed here in a set of specific guidelines to guide the development of reproducibly predictive models from genomic data.

Three ab initio gene-finding programs (Augustus [ 23], GlimmerHMM [ 24], and GeneMark [ 25]) were used to generate gene models from genomic sequence.

Three main types of approaches have been used to infer regulatory models from genomic data (Kim et al., 2009), each suffering from substantial limitations.

They can be used to establish transcript catalogues [ 9- 11] and to provide experimental evidence when building gene models from genomic sequence, particularly for 5' and 3' untranslated sequences [ 12].

(iii) COMBINEDMODELS: gene models derived from genomic sequence regions with BLAST hit and EST evidence.

The best models from each genomic dataset showed different network structures, indicating complex interactions between genomic features within a single genomic level.

Figure  4 shows the results of best ANN models from each genomic dataset: miRNA, methylation, gene expression, and CNA data, respectively.

In a limited set, some manual editing was also used to analyze and combine de novo gene model predictions from genomic sequences (using the Genscan program, Celera and Ensembl gene models) with split predictions into a full-length gene model.

Although applying different prediction models, the gains from genomic prediction over a conventional pedigree index using national reference data were similar between countries.

First, the method uses Markov Chain Monte Carlo (MCMC) to fit the background model from the genomic DNA which, as alerted by [ 33], is well-known for its slow speed and difficulties for users to monitor the convergence.